Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015789683.1_cds_XP_016497679.1_1106
CDS Infomation

[gene=LOC107816459] [db_xref=GeneID:107816459] [protein=GPI transamidase component PIG-S-like isoform X2] [protein_id=XP_016497679.1] [location=join(270901..271090,271189..271861,272291..272375,272471..272560,272697..272770,273208..273292,273376..273465,274243..274373,274799..274880,274948..274995,276383..276493)] [gbkey=CDS]
Sequence

ATGCCGGTTGAGGGAGCTCCTAAGGATTCAACCATGGCGGAGATCTCCGAAGCGCCAACT
TCCTCCTCTGATCCACCTAACACTATGTCGGAAGAGGCATCAGATTTCGACCCTAAAACC
ATGCGTAAAACTAAGCCTGGATTGAAGCGTCTATTTCTCACTCTCACCGTCTTCTTCTCT
TTCCTCATCGCTTTGCCTTTCTTACTAAAATCAATCGAAATTTACCGAGCGCCATTGCCA
TTTGAAGACATCGATTTACTATCATCAGCAATGGAGAAGAATCCATTGCAATATCCTTGC
CAATTTCGAGCAGTTTTTATAAACTTCGATGACATTACTGATATAAATGAGCTAGGGCTT
TTGATCAATTCTAATATGCAAAAGTTGACTACGAAAATTACTCCAGCTTGTGGCACGTGC
GGAAACAATTATACCGTGGCAGTAACAGTTGATTCCAGTTCCAACTGTATTCATAGTGAA
AGGGAAAATGTAGGTAAATGGCAATGCGGAGCGTTGAATGGATTTGATAAGCTGAACGAT
GACGAGGATTTTGATGAGTATTTGGAGTCTGTGTTGGATAGTAAGAATAGGAAACTTTAT
ACGGTTGTGGTGGTGAAGAGGAATGCGGATGAGGAGGAGATGAGAGTTGTTGTTGGAAAA
TATAGGCATGCTTGGATTGTAGGAAAAGATTCTGTGGAGAAAGCTGTTGAGAAGATGGCG
GAGATTTTTGTCAAAGTGTTTGTGAATGGTGGGAAGGAAGAAGGATCAATTCGTGGGGAA
TTCATGCCAGTAGGTGCAGATGGCAAGGTCGTGCTTTCATTCAGTCTTTTGAATTCTGAT
CCGCATGATTGGGTTTATGACTGGGATTTTCAGGAGTTAGATGAGATTCTGCTGGCTCCT
GTTGTCGATGCTTTAAGACCAGTGGCTGATATTAGTGTGGAAAGCCAGGTTCTGTATCAT
ACTCCAAAGGTTTCATACTCGTATTGGGATGACAAGCAGGGTAGCTATATTTTCAGTACA
AAAGATCTTCCTTTCTTTGTAAATTCAAATGAATGGCACTTGGATACTTCAACAGCAGCT
GGAGGGCGGTCAAAAGTCCTGCATTTTGTGCTATATGTGCCATCTGCAAAAGAGTGCCCT
CTAAAGTTGCAGTTTCCAAATGGAGAGATATCCATGACAAATGGCTTTATATCTCCAATG
TGGGGAGGTATTATTGTCTGGAATCCACCGGCCTGTTCAGAGAATTTACAAATTCAACAT
CTTCCCAAGCACAAAATTTCCTCTGAGGACTTGAAGAAGATATCTGAAGTTTTCATGGGA
CAGCTGCGCCAGCTATTTGGTCTAAAGTCTGAGAACCATTATGTTGGTGCATTTGCCACA
TCTGTACTTTTAACCAGTGCAAAAGGCTTTGCAGAATGGGAGTTGGATGTGTTATCTAGG
CATCACACATGCTTCAATCTTCTTCAGTGTGGCACCACCCTTGGATCTCTCTCTCGATTG
GTTCAATCCCTTCCCAGGATGATCATCATGGATGAAATAGGGAAACAGCCATTCTTTCTG
CCAGTTTCACTGCATGTGCTTCTTGCAGTCATTAGAGAATGGAGAAGATATAAAGTAGAA
AACAGAAAGTACCTTGCATGGAAAGCCAAACTTGAATAG

Peptide Sequence

PEP ID

XP_016497679.1
PEP Infomation

PREDICTED: GPI transamidase component PIG-S-like isoform X2 [Nicotiana tabacum]
Sequence

MPVEGAPKDSTMAEISEAPTSSSDPPNTMSEEASDFDPKTMRKTKPGLKRLFLTLTVFFS
FLIALPFLLKSIEIYRAPLPFEDIDLLSSAMEKNPLQYPCQFRAVFINFDDITDINELGL
LINSNMQKLTTKITPACGTCGNNYTVAVTVDSSSNCIHSERENVGKWQCGALNGFDKLND
DEDFDEYLESVLDSKNRKLYTVVVVKRNADEEEMRVVVGKYRHAWIVGKDSVEKAVEKMA
EIFVKVFVNGGKEEGSIRGEFMPVGADGKVVLSFSLLNSDPHDWVYDWDFQELDEILLAP
VVDALRPVADISVESQVLYHTPKVSYSYWDDKQGSYIFSTKDLPFFVNSNEWHLDTSTAA
GGRSKVLHFVLYVPSAKECPLKLQFPNGEISMTNGFISPMWGGIIVWNPPACSENLQIQH
LPKHKISSEDLKKISEVFMGQLRQLFGLKSENHYVGAFATSVLLTSAKGFAEWELDVLSR
HHTCFNLLQCGTTLGSLSRLVQSLPRMIIMDEIGKQPFFLPVSLHVLLAVIREWRRYKVE
NRKYLAWKAKLE

Transcript Sequence

Gene sequence data has not been registered.